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The naive state of human pluripotent stem cells:
a synthesis of stem cell and preimplantation embryo transcriptome analyses.
Kevin Huang, Toru Maruyama, and Guoping Fan
Cell Stem Cell. 2014 Oct 2;15(4):410-5.
Processed mouse dataset used for WGCNA (ComBat batch normalization files also included):
Affymetrix dataset
ComBat
Illumina dataset
ComBat
Processed human datasets used for WGCNA can be downloaded below:
Wang et al. (Nature. 2014)
Takashima et al. (Cell. 2014)
Theunissen et al. (Cell Stem Cell. 2014)
Ware et al. (PNAS. 2014)
Chan et al. (Cell Stem Cell. 2013)
Gafni et al. (Nature. 2013)
Hanna et al. (PNAS. 2010)
Learn more about WGCNA here!
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